gsea enrichment plot analysis Search Results


gsea plots  (Novogene)
86
Novogene gsea plots
Gsea Plots, supplied by Novogene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/analysis+gsea/bio_rxiv__64898__2026__04__03__716381-228-0-5
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gsea software version 3.0  (Broad Institute Inc)
90
Broad Institute Inc gsea software version 3.0
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Gsea Software Version 3.0, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/gsea+software/pmc06197277-363-9-15
Average 90 stars, based on 1 article reviews
gsea software version 3.0 - by Bioz Stars, 2026-09
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gsea enrichment plot analysis  (BioCarta)
90
BioCarta gsea enrichment plot analysis
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Gsea Enrichment Plot Analysis, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/gsea/pm40580577-218-11-26
Average 90 stars, based on 1 article reviews
gsea enrichment plot analysis - by Bioz Stars, 2026-09
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gsea plots  (Broad Institute Inc)
90
Broad Institute Inc gsea plots
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Gsea Plots, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/gsea+plots/pm37759477-92-3-9
Average 90 stars, based on 1 article reviews
gsea plots - by Bioz Stars, 2026-09
90/100 stars
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gsea desktop module  (Broad Institute Inc)
90
Broad Institute Inc gsea desktop module
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Gsea Desktop Module, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/gsea+desktop+module/pm30076667-104-40-105
Average 90 stars, based on 1 article reviews
gsea desktop module - by Bioz Stars, 2026-09
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are-nrf2 pathway  (BioCarta)
90
BioCarta are-nrf2 pathway
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Are Nrf2 Pathway, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/kegg+biocarta+pathways/10__1158_slash_1078___0432__ccr___24___1317-284-38-30
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gene set enrichment analysis (gsea) plots  (BioCarta)
90
BioCarta gene set enrichment analysis (gsea) plots
UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01
Gene Set Enrichment Analysis (Gsea) Plots, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+enrichment+plot+analysis/gene+set+enrichment+analysis++gsea+/pm35974143-88-1-18
Average 90 stars, based on 1 article reviews
gene set enrichment analysis (gsea) plots - by Bioz Stars, 2026-09
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UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01

Journal: Nature Communications

Article Title: Long non-coding RNA-dependent mechanism to regulate heme biosynthesis and erythrocyte development

doi: 10.1038/s41467-018-06883-x

Figure Lengend Snippet: UCA1 depletion impairs heme metabolism and blocks erythroid maturation. a The relative UCA1 expression was quantitated by qRT-PCR on days 8 and 14 in shRNA or control lentivirus (EV) infected primary erythroid cells. 18S rRNA was used as the internal control. b – h Human primary erythroid differentiation was monitored by flow cytometry (CD71 + CD235a + cells) ( b , c ), Wright-Giemsa staining ( d , Scale bar = 10 μm), the cellular ( e ) and nuclear size ( f ) (on day 14, n = 100), and benzidine staining ( g , h , Scale bar = 20 μm) on days 14 in shRNA lentivirus infected cells or control lentivirus (EV) infected cells. i The heatmap depicts DEGs profiling after UCA1 depletion (shRNA#2) in differentiated erythroblasts at day 8 ( P adj < 0.05 and FPKM > 0.1). j Hallmark gene set enrichment analysis of DEGs after UCA1 knockdown. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01

Article Snippet: GSEA was conducted, and the plots was generated by GSEA software (version 3.0) from the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ).

Techniques: Expressing, Quantitative RT-PCR, shRNA, Control, Infection, Flow Cytometry, Staining, Knockdown, Generated

Linking UCA1 and PTBP1-regulated erythroid maturation to the control of heme biosynthesis. a The heatmap depicts the fold-change in DEGs after UCA1 (shRNA#2/EV) or PTBP1 depletion (shRNA#1/EV) in differentiated erythroblasts at day 8. b Hallmark enrichment analysis of the common DEGs. c GSEA showed heme metabolism gene set enrichment from the common DEGs after UCA1 (left) or PTBP1 (right) depletion. Normalized enrichment scores (NES) and P -values are indicated in each plot. d Heatmap shows the expression of heme metabolism related genes after UCA1 or PTBP1 downregulation. e GO analysis of the common heme metabolism related genes after UCA1 or PTBP1 depletion. f , g qRT-PCR to analyze the expression of genes involved in heme biosynthesis on days 8 in differentiated primary erythroid cells after UCA1 ( f ) or PTBP1 ( g ) depletion. GAPDH mRNA was used as an internal control. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01

Journal: Nature Communications

Article Title: Long non-coding RNA-dependent mechanism to regulate heme biosynthesis and erythrocyte development

doi: 10.1038/s41467-018-06883-x

Figure Lengend Snippet: Linking UCA1 and PTBP1-regulated erythroid maturation to the control of heme biosynthesis. a The heatmap depicts the fold-change in DEGs after UCA1 (shRNA#2/EV) or PTBP1 depletion (shRNA#1/EV) in differentiated erythroblasts at day 8. b Hallmark enrichment analysis of the common DEGs. c GSEA showed heme metabolism gene set enrichment from the common DEGs after UCA1 (left) or PTBP1 (right) depletion. Normalized enrichment scores (NES) and P -values are indicated in each plot. d Heatmap shows the expression of heme metabolism related genes after UCA1 or PTBP1 downregulation. e GO analysis of the common heme metabolism related genes after UCA1 or PTBP1 depletion. f , g qRT-PCR to analyze the expression of genes involved in heme biosynthesis on days 8 in differentiated primary erythroid cells after UCA1 ( f ) or PTBP1 ( g ) depletion. GAPDH mRNA was used as an internal control. Bar graphs were generated with data from three independent experiments ( n = 3). Error bars represent SEM. P -values were determined by Student’s t -test. *P < 0.05, **P < 0.01

Article Snippet: GSEA was conducted, and the plots was generated by GSEA software (version 3.0) from the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ).

Techniques: Control, shRNA, Expressing, Quantitative RT-PCR, Generated